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Clostridioides difficile

  • Classification: Gram-positive rod, spore-forming, obligate anaerobe
  • Key labs: Toxin A and B PCR or EIA from stool; does not require culture
  • Colonization: GI tract; spores survive on surfaces and resist alcohol hand sanitizers
  • Clinical style: Antibiotic-disrupted flora → toxin-mediated colitis
  • Organism family: Clostridiaceae
  • Distinguishing feature: Large gram-positive rod producing heat-resistant spores
  • Prior name: Clostridium difficile
  • Human GI tract and healthcare environment
  • Fecal-oral route; spores are highly persistent on hospital surfaces
  • Risk factors: Recent antibiotic use, hospitalization, proton pump inhibitor use, advanced age, immunosuppression
  • Most common nosocomial infection in the United States
  • Toxin A (enterotoxin): disrupts tight junctions, causing fluid secretion and mucosal damage
  • Toxin B (cytotoxin): more potent; depolymerizes actin leading to cell death
  • Both toxins work together to produce pseudomembrane formation
  • Hypervirulent NAP1/BI/027 strain produces binary toxin and higher toxin levels
  • Watery, non-bloody diarrhea after antibiotic exposure
  • Most commonly after clindamycin, fluoroquinolones, and broad-spectrum penicillins and cephalosporins
  • Onset can occur weeks after antibiotic course has finished
  • Severe form with profuse watery diarrhea, abdominal cramping, fever, and leukocytosis
  • Colonoscopy shows yellow-white pseudomembranes overlying the colonic mucosa
  • Hallmark clue: leukocytosis out of proportion to clinical appearance
  • Life-threatening complication with colonic dilation greater than 6 cm
  • Paradoxical decrease in diarrhea as motility fails
  • Requires urgent surgical consultation
  • Preferred test: Stool PCR for toxin B gene (most sensitive)
  • Stool EIA for toxins A and B (less sensitive but acceptable)
  • Do not test asymptomatic patients or formed stool
  • Colonoscopy if diagnosis uncertain or pseudomembranes needed for confirmation
  • Oral vancomycin or oral fidaxomicin (preferred over metronidazole for initial episodes)
  • Oral vancomycin; add IV metronidazole if ileus is present preventing oral absorption
  • Second recurrence: fidaxomicin preferred
  • Multiple recurrences: fecal microbiota transplant (FMT) is highly effective
  • Contact precautions with soap and water handwashing (alcohol does not kill spores)
  • Antibiotic stewardship to reduce unnecessary broad-spectrum use

For antibiotic mechanisms and resistance, see Pharmacology: Antimicrobials.

  • Metronidazole is no longer first-line for initial C. diff episodes; vancomycin or fidaxomicin is preferred
  • Alcohol-based hand sanitizers do not kill spores; soap and water is required
  • Testing formed stool or asymptomatic colonization is misleading and should not be done
  • A drop in diarrhea in severe C. diff may signal toxic megacolon, not improvement